species:   Comil
pid:       PID1164
parent:    milR32
paralog:   
locus:     NW_006271976.1:456220-456299
matures:   ['CGGUCGAAUACGUGCGGAUUGAGA', 'UCAAUCCGCACCAGAUGGCU']
srr:       SRR8054057
genome:    /Users/jax/+Genomes/Fungal_genomes/Comil.GCF_000225605.1_CmilitarisCM01_v01_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Shao2019-xf.SRR8054057.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Shao2019-xf.SRR8054057.cram NW_006271976.1:456220-456299

47 out of bounds
120 alignments
13 proper strand
10 stranded perfect matches

             *************************           **********************         
ACCGAGUCGCCGGUCGAAUACGUGCGGAUUGAGACACCGCCGCAAUCAUGGUCGCCUCAAUCCGCACCAGAUGGCUCGGU
((((((((....(((......((((((((((((.(((((.........)))).).))))))))))))..)))))))))))
----------CGGUCGAAUACGUGCGGAUUGAGA---------------------------------------------- l=24 a=0 c
--------------------------------------------------------UCAAUCCGCACCAGAUGGCU---- l=20 a=0 c*
---------------GAAUACGUGCGGAUUGAGACACC------------------------------------------ l=23 a=2 ma
---------------------------------------------------UCGCCUCAAUCCGCACCAGA--------- l=20 a=0 ma*

---------------------------------------------UCAUGGUCGCCUCAAUCCGC--------------- l=20 a=1 
----------------AAUACGUGCGGAUUGAGACAC------------------------------------------- l=21 a=1 
---------------GAAUACGUGCGGAUUGAGACACC------------------------------------------ l=23 a=2 (ma)
-------------UCGAAUACGUGCGGAUUGAGA---------------------------------------------- l=21 a=1 
-------------UCGAAUACGUGCGGAUUGAGAC--------------------------------------------- l=22 a=1 
-------------UCGAAUACGUGCGGAUUGAGACAC------------------------------------------- l=24 a=2 
-------------UCGAAUACGUGCGGAUUGAGACACC------------------------------------------ l=25 a=1 
------------GUCGAAUACGUGCGGAUUGAGAuA-------------------------------------------- l=24 a=1 
--CGAGUCGCCGGUCGAAUACGUa-------------------------------------------------------- l=22 a=2 
ACCGAGUCGCCGGUCGAAUACGU--------------------------------------------------------- l=23 a=1 

mb-00011
ax-1001011
ku-01
ss-111111001100
fn-101
